Trajectory inference for a branching SDE model of cell differentiation (preprint) (code)
Elias Ventre, Aden Forrow, Nitya Gadhiwala, Parijat Chakraborty, Omer Angel, and Geoffrey Schiebinger, 2023

Time-and lineage-resolved transcriptional profiling uncovers gene expression programs and clonal relationships that underlie human T lineage specification (preprint)
Yale S Michaels, Matthew C Major, Becca Bonham-Carter, Jingqi Zhang, Tiam Heydari, John M Edgar, Laura Greenstreet, Roser Vilarrasa-Blasi, Seungjoon Kim, Elizabeth L Castle, Aden Forrow, M Iliana Ibanez-Rios, Carla Zimmerman, Yvonnne Chung, Tara Stach, Nico Werschler, David JHF Knapp, Roser Vento-Tormo, Geoffrey Schiebinger, and Peter W Zandstra, 2023

Measuring the accuracy of likelihood-free inference (preprint) (code)
Aden Forrow and Ruth E. Baker, 2021

A blood atlas of COVID-19 defines hallmarks of disease severity and specificity (preprint)
The COMBAT Consortium, Cell 2022

LineageOT is a unified framework for lineage tracing and trajectory inference (preprint) (code) (docs)
Aden Forrow and Geoffrey Schiebinger, Nature Communications 2021

Learning dynamical information from static protein and sequencing data (preprint)
Philip Pearce, Francis G. Woodhouse, Aden Forrow, Ashley Kelley, Halim Kusumaatmaja, and Jörn Dunkel, Nature Communications 2019

Statistical optimal transport via factored couplings (preprint)
Aden Forrow, Jan-Christian Hütter, Mor Nitzan, Philippe Rigollet, Geoffrey Schiebinger, and Jonathan Weed, AISTATS 2019 *

Inverse design of discrete mechanical metamaterials (preprint)
Henrik Ronellenfitsch, Norbert Stoop, Josephine Yu, Aden Forrow, and Jörn Dunkel, Physical Review Materials 2019

Functional control of network dynamics using designed Laplacian spectra (preprint)
Aden Forrow, Francis G. Woodhouse, and Jörn Dunkel, Physical Review X 2018

Mode selection in compressible active flow networks (preprint)
Aden Forrow, Francis G. Woodhouse, and Jörn Dunkel, Physical Review Letters 2017

Warning's second theorem with restricted variables (preprint)
Pete L. Clark, Aden Forrow, and John R. Schmitt, Combinatorica 2017 *

Stochastic cycle selection in active flow networks (preprint)
Francis G. Woodhouse, Aden Forrow, Joanna Fawcett, and Jörn Dunkel, PNAS 2016

Variable phase S-matrix calculations for asymmetric potentials and dielectrics (preprint)
Aden Forrow and Noah Graham, Physical Review A 2012

*authors listed alphabetically